SoulBio
SoulBio Lab

Tools, research, and ideas from the lab.

The Lab brings together the tools we build, the research we publish, and the practical lessons we share with teams solving similar scientific problems.

Explore the lab

One place for what we build and what we learn.

Browse tools, open research, technical writing, and applied work from the SoulBio team.

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Tools

Working products for recurring research problems.

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Publications

Open-access research from our team and collaborators.

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Writing

Methods, perspectives, and lessons from the work.

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Case Studies

Applied examples and reusable discovery approaches.

Builds

Tools from SoulBio Lab

Products we build to make scientific discovery more searchable, traceable, and repeatable.

Lab tool

Reproducibility Dashboard

An evidence-based reliability score for open science papers.

A dashboard that visualizes open science papers against internal build signals. Before diving deep into any paper, the dashboard gives a quick read on whether it's worth exploring — not reproducibility in its strict sense, but an evidence-based robustness score aggregated from signals around the paper.

  • Aggregate evidence signals from code, data, and citations
  • Reliability score with transparent sub-scores
  • Triage queue for literature reviews
Explore tool
Lab tool

GEO Dataset Findability

Natural-language search across 250k+ GEO datasets.

A clean interface to find GEO datasets using plain-English queries across 250,000+ datasets. Returns annotated metadata tailored to the request — so the right cohort, assay, or condition is one query away.

  • Semantic search over 250k+ GEO datasets
  • Query-aware metadata annotation
  • Export-ready cohort shortlists
Explore tool
Lab tool

GPT CellType Annotation

Automated cell type annotation powered by GPT.

Annotate cell types in your single-cell datasets using an automated pipeline that pairs marker-gene statistics with GPT-based reasoning. Cuts hours of manual curation down to minutes — with citations for every call.

  • End-to-end pipeline from clusters to labels
  • GPT-assisted reasoning over marker genes
  • Audit trail with literature references
Explore tool
Research

Publications

Open-access research from the SoulBio team and collaborators.

Perspectives

Writing

Technical notes and perspectives on the methods, datasets, and infrastructure behind modern computational biology.

Applied work

Case Studies

Applied examples of how SoulBio turns complex biological data into usable discovery systems.

Want a specific topic? Let us know.

Collaborate

Want early access or to build alongside us?

Reach out to pilot a tool, propose an integration, or shape the next release with our research team.

Get in touch